Package: covidcast 0.5.2

covidcast: Client for Delphi's 'COVIDcast Epidata' API

Tools for Delphi's 'COVIDcast Epidata' API: data access, maps and time series plotting, and basic signal processing. The API includes a collection of numerous indicators relevant to the COVID-19 pandemic in the United States, including official reports, de-identified aggregated medical claims data, large-scale surveys of symptoms and public behavior, and mobility data, typically updated daily and at the county level. All data sources are documented at <https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html>.

Authors:Taylor Arnold [aut], Jacob Bien [aut], Logan Brooks [aut], Sarah Colquhoun [aut], David Farrow [aut], Jed Grabman [ctb], Pedrito Maynard-Zhang [ctb], Kathryn Mazaitis [aut], Alex Reinhart [aut, cre], Ryan Tibshirani [aut]

covidcast_0.5.2.tar.gz
covidcast_0.5.2.zip(r-4.5)covidcast_0.5.2.zip(r-4.4)covidcast_0.5.2.zip(r-4.3)
covidcast_0.5.2.tgz(r-4.4-any)covidcast_0.5.2.tgz(r-4.3-any)
covidcast_0.5.2.tar.gz(r-4.5-noble)covidcast_0.5.2.tar.gz(r-4.4-noble)
covidcast_0.5.2.tgz(r-4.4-emscripten)covidcast_0.5.2.tgz(r-4.3-emscripten)
covidcast.pdf |covidcast.html
covidcast/json (API)
NEWS

# Install 'covidcast' in R:
install.packages('covidcast', repos = c('https://capnrefsmmat.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cmu-delphi/covidcast/issues

Datasets:

On CRAN:

4.87 score 295 scripts 668 downloads 19 exports 56 dependencies

Last updated 1 years agofrom:0cecd72e8e. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 04 2024
R-4.5-winOKNov 04 2024
R-4.5-linuxOKNov 04 2024
R-4.4-winNOTENov 04 2024
R-4.4-macNOTENov 04 2024
R-4.3-winNOTENov 04 2024
R-4.3-macNOTENov 04 2024

Exports:abbr_to_fipsabbr_to_nameaggregate_signalsas.covidcast_signalcbsa_to_namecounty_fips_to_namecovidcast_corcovidcast_longercovidcast_metacovidcast_signalcovidcast_signalscovidcast_widerearliest_issuefips_to_abbrlatest_issuename_to_abbrname_to_cbsaname_to_fipsstate_fips_to_name

Dependencies:askpassclassclassIntclicolorspacecpp11curlDBIdplyre1071fansifarvergenericsggplot2gluegtablehttrisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimeMMWRweekmunsellnlmeopensslpillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2scalessfstringistringrsystibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwkxml2

Plotting and mapping signals

Rendered fromplotting-signals.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2023-07-13
Started: 2021-05-04

Computing signal correlations

Rendered fromcorrelation-utils.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2022-10-06
Started: 2021-05-04

Manipulating multiple signals

Rendered frommulti-signals.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2023-06-26
Started: 2021-05-04

Combine external data sources and COVIDcast data

Rendered fromexternal-data.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2023-06-26
Started: 2021-05-04

Get started with covidcast

Rendered fromcovidcast.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2023-06-26
Started: 2021-05-04

Readme and manuals

Help Manual

Help pageTopics
Get FIPS codes from state abbreviationsabbr_to_fips
Get state names from state abbreviationsabbr_to_name
Aggregate 'covidcast_signal' objects into one data frameaggregate_signals
Convert data from an external source into a form compatible with 'covidcast_signal'.as.covidcast_signal as.covidcast_signal.covidcast_signal as.covidcast_signal.data.frame
County census population datacounty_census
Compute correlations between two 'covidcast_signal' data framescovidcast_cor
Pivot aggregated signals between "wide" and "long" formatscovidcast_longer covidcast_wider
Obtain COVIDcast metadatacovidcast_meta
Obtain a data frame for one COVIDcast signalcovidcast_signal
Obtain multiple COVIDcast signals at oncecovidcast_signals
Get state abbreviations from FIPS codesfips_to_abbr
Fetch the latest or earliest issue for each observationearliest_issue latest_issue
Metro area population datamsa_census
Get state abbreviations from state namesname_to_abbr
Get FIPS or CBSA codes from county or metropolitan area namesname_to_cbsa name_to_fips
Plot 'covidcast_signal' object as choropleths, bubbles, or time seriesplot.covidcast_signal
Print 'covidcast_meta' objectprint.covidcast_meta
Print 'covidcast_signal' objectprint.covidcast_signal
State population datastate_census
Get state, county or metropolitan area names from FIPS or CBSA codescbsa_to_name county_fips_to_name state_fips_to_name
Summarize 'covidcast_meta' objectsummary.covidcast_meta
Summarize 'covidcast_signal' objectsummary.covidcast_signal